miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Carthamus tinctorius



ABOUT THIS RECORD

ID: MNEST002903
species: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTTCA

miRNA*
GAGATGGTGATGGTGATGATA

mismatches: 0
bulges: 0

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pre-miRNA
CATGTTCTTCTTCATCATCATCATCATCTTCATCATTTACTTTGTTTAGCTTTAGACCCTTCAATAAGCGTTTCAATTTCTTCAACCCACCTCGTTCTTC
CCTCAAACAATCCAAAAAACGCCAACAAAACCTTCAAACGAATGCCCCACCTCCACCGCAAAGCAGCATCAGGAGACTCTTGAACTTTAACAATAACCCT
AAAGATGATGGTGGTGAAGATGGAGATGGAGATGGTGATGGTGATGATAACGGGACT


dot-bracket secondary structure
...(((((...(((((((((((((((((((((((.((((..(((....((((..((....))...))))....)))..((((((..((((((((((....
....................................))))).(((.................)))...((((((...)))))).(((((..........)
)))).....))))))))))))))))))))))))))))))))))))))....))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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